The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2109
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 54744
End posion on genome 54817
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
taactatttt
tRNA gene sequence 
GCCGCCGTGCCCGAGCGGCCAAAGGGGTCGGGCTGCAGACCCGATGGTCGGGGGTTCGAA
TCCCCCCGGCGGCTtag
Downstream region at tRNA end position 
cattagtata
Secondary structure (Cloverleaf model)
>At2109	Cys	GCA
                   t      Ttag cattagtata
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G G G G G     C
    G         | | |                 T T
    C       A G G G
      C A A        G     TGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGCCCGAGCGGCCAAAGGGGTCGGGCTGCAGACCCGATGGTCGGGGGTTCGAA
TCCCCCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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