The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2112
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 161947
End posion on genome 162030
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position
attagatact
tRNA gene sequence
GCGGCCGTGCCCGAGCGGTCGAAGGGGTCGGGCTTAGGACCCGATGGGTTAGTCCCGTCC
GGGGTTCGAATCCCCGCGGCCGCActa
Downstream region at tRNA end position
taggttagca
Secondary structure (Cloverleaf model)
>At2112	Leu	TAG
                   t      Acta taggttagca
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       C G G G G     C
    G         | | |                 T T
    T       A G G G
      C G A        G     TGGGTTAGTCCCGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTGCCCGAGCGGTCGAAGGGGTCGGGCTTAGGACCCGATGGGTTAGTCCCGTCC
GGGGTTCGAATCCCCGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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