The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2113
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 163996
End posion on genome 164080
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
ataaagcctg
tRNA gene sequence 
CCGGGCGTAGCTCAGCGGCAGAGCGGCCGGCTGTAGACCGGCAGGTCGGGGGTTCGAATC
CCCCCGCCCGGActt
Downstream region at tRNA end position 
accttttcat
Secondary structure (Cloverleaf model)
>At2113	Tyr	GTA
                   g      Actt accttttcat
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     C C C C C     A
        G A        A      | | | | |     G
      C     C T C G       G G G G G     C
      G     | | | |                 T T
      G     G A G C
        C A        G     AGGTC
                    G - C
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCGGGCGTAGCTCAGCGGCAGAGCGGCCGGCTGTAGttgtatagcagatACCGGCAGGTC
GGGGGTTCGAATCCCCCCGCCCGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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