The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2114
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 220492
End posion on genome 220565
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ttaaaatttt
tRNA gene sequence 
GGGCCCGTAGCTTAGCTAGGTAAAGCGCCGGGTTGCGGACCCGGAGATCGCGGGTTCGAA
TCCCGCCGGGCCCGgat
Downstream region at tRNA end position 
tatttttcct
Secondary structure (Cloverleaf model)
>At2114	Arg	GCG
                   t      Ggat tatttttcct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     G
    T       T T C G       G C G G G     C
    A       | | | |                 T T
    G       A A G C
      G T A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCTAGGTAAAGCGCCGGGTTGCGGACCCGGAGATCGCGGGTTCGAA
TCCCGCCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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