The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2116
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 259125
End posion on genome 259197
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
attagttcta
tRNA gene sequence 
GCCCCGGTGGTGTAGCGGCCTAGCATGCGGGCCTGTCGAGCCCGCGACCCGGGTTCAAAT
CCCGGCCGGGGCGgtt
Downstream region at tRNA end position 
ttttcattct
Secondary structure (Cloverleaf model)
>At2116	Asp	GTC
                   a      Ggtt ttttcattct
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       T G T G       C C G G G     C
    G       + | | +                 T T
    C       G C A T
      C T A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGTGTAGCGGCCTAGCATGCGGGCCTGTCGAGCCCGCGACCCGGGTTCAAAT
CCCGGCCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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