The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2117
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 304059
End posion on genome 304142
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position
tatatgcact
tRNA gene sequence
GCGGCCGTGCCCGAGCGGTCGAAGGGGTCGGGCTCAAGACCCGATGGGTTAGTCCCGTCC
GGGGTTCGAATCCCCGCGGCCGCAttt
Downstream region at tRNA end position
ggtaatttta
Secondary structure (Cloverleaf model)
>At2117	Leu	CAA
                   t      Attt ggtaatttta
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       C G G G G     C
    G         | | |                 T T
    T       A G G G
      C G A        G     TGGGTTAGTCCCGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTGCCCGAGCGGTCGAAGGGGTCGGGCTCAAGACCCGATGGGTTAGTCCCGTCC
GGGGTTCGAATCCCCGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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