The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2119
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 309680
End posion on genome 309751
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position
tagccgaaat
tRNA gene sequence
GGGCCCGTAGTCTAGGGGGAAGACGCCGGGTTCGGGTCCCGGAGATCGCGGGTTCGAATC
CCGCCGGGCCCAgat
Downstream region at tRNA end position
atttttataa
Secondary structure (Cloverleaf model)
>At2119	Pro	CGG
                   t      Agat atttttataa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     G
      G     T C T G       G C G G G     C
      G     | | | |                 T T
      G     A G A C
        G A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGGGGGAAGACGCCGGGTTCGGGTCCCGGAGATCGCGGGTTCGAATC
CCGCCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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