The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2121
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 427433
End posion on genome 427506
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
atccaactct
tRNA gene sequence 
GGGCCCGTAGCTCAGCTTGGTAGAGCGGCGGCCTCCTAAGCCGTAGGTCGCGGGTTCGAA
TCCCGCCGGGCCCGgaa
Downstream region at tRNA end position 
tatttttaaa
Secondary structure (Cloverleaf model)
>At2121	Arg	CCT
                   t      Ggaa tatttttaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     G
    T       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCTTGGTAGAGCGGCGGCCTCCTAAGCCGTAGGTCGCGGGTTCGAA
TCCCGCCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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