The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2122
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 471205
End posion on genome 471287
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ttgacctaaa
tRNA gene sequence 
GCCGCCGTGCCCGAGCGGTCAAGGGGCCTGCCTGCTAAGCAGGTCCCCGTATGGGGGCGG
GGGTTCGAATCCCCCCGGCGGCGcta
Downstream region at tRNA end position 
aagctttaaa
Secondary structure (Cloverleaf model)
>At2122	Ser	GCT
                   a      Gcta aagctttaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G G G G G     C
    G         | | |                 T T
    T       A G G G
      C A          G     TCCCCGTATGGGGGC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGCCCGAGCGGTCAAGGGGCCTGCCTGCTAAGCAGGTCCCCGTATGGGGGCGG
GGGTTCGAATCCCCCCGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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