The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2123
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 471321
End posion on genome 471392
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
taatctctct
tRNA gene sequence 
GGGCCCGTAGTCTAGGGGTATGACGCCGCCCTGACGAGGCGGAGGTCCGGGGTTCGAATC
CCCGCGGGCCCAtgt
Downstream region at tRNA end position 
attcactaaa
Secondary structure (Cloverleaf model)
>At2123	Val	GAC
                   t      Atgt attcactaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      G     T C T G       C G G G G     C
      G       | | |                 T T
      G     T G A C
        T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGGGGTATGACGCCGCCCTGACGAGGCGGAGGTCCGGGGTTCGAATC
CCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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