The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2124
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 476845
End posion on genome 476928
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position
taaagcttat
tRNA gene sequence
GCGGCCGTGCCCGAGCGGACAAAGGGGCCAGGTTGAGGTCCTGGTGGGGTAGTCCCTGCC
GGGGTTCGAATCCCCGCGGCCGCActa
Downstream region at tRNA end position
tttgttttct
Secondary structure (Cloverleaf model)
>At2124	Leu	GAG
                   t      Acta tttgttttct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       C G G G G     C
    G         | | |                 T T
    A       A G G G
      C A A        G     TGGGGTAGTCCCTGC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       T
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTGCCCGAGCGGACAAAGGGGCCAGGTTGAGGTCCTGGTGGGGTAGTCCCTGCC
GGGGTTCGAATCCCCGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK