The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2126
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 7074
End posion on genome 7001
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
tactagctct
tRNA gene sequence 
GGGCCCGTGGCTCAGCCTGGCAGAGCGCCCGGCTGATAACCGGGAGGTCGCGGGTTCGAA
TCCCGCCGGGCCCActa
Downstream region at tRNA end position 
ggcgattaaa
Secondary structure (Cloverleaf model)
>At2126	Ile	GAT
                   t      Acta ggcgattaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGCCTGGCAGAGCGCCCGGCTGATAACCGGGAGGTCGCGGGTTCGAA
TCCCGCCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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