The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2127
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 29341
End posion on genome 29270
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
taccaatctc
tRNA gene sequence 
GGGGCGGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGAGGTCGGGGGTTCAAATC
CCCCCCGCCCCAtag
Downstream region at tRNA end position 
atttataaat
Secondary structure (Cloverleaf model)
>At2127	Phe	GAA
                   c      Atag atttataaat
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
        G A        A      | | | | |     A
      C     C T C G       G G G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCGGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGAGGTCGGGGGTTCAAATC
CCCCCCGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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