The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2128
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 35389
End posion on genome 35318
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
aatcgaaacc
tRNA gene sequence 
GGGCCCGTAGTCCAGCGGTAGGACGCCGCCCTCGCAAGGCGGAGGCCCCGGGTTCGAATC
CCGGCGGGTCCAtta
Downstream region at tRNA end position 
aatatgaaaa
Secondary structure (Cloverleaf model)
>At2128	Ala	CGC
                   c      Atta aatatgaaaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     C C T G       C C G G G     C
      G     | | | |                 T T
      G     G G A C
        T A        G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCCAGCGGTAGGACGCCGCCCTCGCAAGGCGGAGGCCCCGGGTTCGAATC
CCGGCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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