The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2129
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 54150
End posion on genome 54080
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position
ttctatctct
tRNA gene sequence
GCGCCCGTAGTCTAGTGGTAGGATGCGGGCCTTCCAAGCCCGTGACCCGGGTTCGAATCC
CGGCGGGCGCAtga
Downstream region at tRNA end position
tgaaattatc
Secondary structure (Cloverleaf model)
>At2129	Gly	TCC
                   t      Atga tgaaattatc
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      T     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCCGTAGTCTAGTGGTAGGATGCGGGCCTTCCAAGCCCGTGACCCGGGTTCGAATCC
CGGCGGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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