The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2130
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 72103
End posion on genome 72031
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
agaatatact
tRNA gene sequence 
AGCCCCGTGGTGTAGCGGCCTAGCATGCGGGGCTCTGGTCCCCGTGACCCCGGTTCGAAT
CCGGGCGGGGCTAtcc
Downstream region at tRNA end position 
atagtatttt
Secondary structure (Cloverleaf model)
>At2130	Gln	CTG
                   t      Atcc atagtatttt
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G G C C     A
      C G A        G      | | | | |     G
    G       T G T G       C C C G G     C
    G       + | | +                 T T
    C       G C A T
      C T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       T
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCCGTGGTGTAGCGGCCTAGCATGCGGGGCTCTGGTCCCCGTGACCCCGGTTCGAAT
CCGGGCGGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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