The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2133
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 135353
End posion on genome 135280
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
tattatgctt
tRNA gene sequence 
GGGGCCGTGGCCCAGCTTGGTAGGGCGCCGGCCTGGGGCGCCGGAGGTCCCGGGTTCAAA
TCCCGGCGGCCCCAttt
Downstream region at tRNA end position 
ttaaattatc
Secondary structure (Cloverleaf model)
>At2133	Pro	GGG
                   t      Attt ttaaattatc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    T       C C C G       C C G G G     C
    T       | | | |                 T T
    G       G G G C
      G T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGCCCAGCTTGGTAGGGCGCCGGCCTGGGGCGCCGGAGGTCCCGGGTTCAAA
TCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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