The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2136
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 179651
End posion on genome 179578
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
attgaactct
tRNA gene sequence 
GGGCCCGTAGCTCAGCTTGGTAGAGCGGCGGCCTTCTAAGCCGTAGGTCGCGGGTTCGAA
TCCCGCCGGGCCCGctt
Downstream region at tRNA end position 
taattgtcta
Secondary structure (Cloverleaf model)
>At2136	Arg	TCT
                   t      Gctt taattgtcta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     G
    T       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCTTGGTAGAGCGGCGGCCTTCTAAGCCGTAGGTCGCGGGTTCGAA
TCCCGCCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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