The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2139
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 259301
End posion on genome 259230
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
atgttatacc
tRNA gene sequence 
GGGCCCGTAGTCCAGCGGTAGGACGCCGCCCTGGCACGGCGGAGGCCCCGGGTTCGAATC
CCGGCGGGTCCActa
Downstream region at tRNA end position 
ttttttctca
Secondary structure (Cloverleaf model)
>At2139	Ala	GGC
                   c      Acta ttttttctca
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     C C T G       C C G G G     C
      G     | | | |                 T T
      G     G G A C
        T A        G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCCAGCGGTAGGACGCCGCCCTGGCACGGCGGAGGCCCCGGGTTCGAATC
CCGGCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK