The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2140
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 260652
End posion on genome 260579
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
acaattagct
tRNA gene sequence 
GGGCCGTTAGCTCAGCCAGGTAGAGCGGCGGGCTTCGGACCCGCAGGTCGGGGGTTCGAA
TCCCCCACGGCCCGttt
Downstream region at tRNA end position 
aaattggtaa
Secondary structure (Cloverleaf model)
>At2140	Arg	TCG
                   t      Gttt aaattggtaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGTTAGCTCAGCCAGGTAGAGCGGCGGGCTTCGGACCCGCAGGTCGGGGGTTCGAA
TCCCCCACGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK