The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2142
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 323008
End posion on genome 322938
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position
tataaaccaa
tRNA gene sequence
GCGCCCGTAGTCTAGGGGTAGGATGCGGGCCCCCCAAGCCCGTGACCCGGGTTCGAATCC
CGGCGGGCGCAtta
Downstream region at tRNA end position
agacaaagca
Secondary structure (Cloverleaf model)
>At2142	Gly	CCC
                   a      Atta agacaaagca
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      G     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  C       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCCGTAGTCTAGGGGTAGGATGCGGGCCCCCCAAGCCCGTGACCCGGGTTCGAATCC
CGGCGGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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