The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2143
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 347848
End posion on genome 347777
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
atactcctac
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGAAGAGCGCCGCCCTGGTAAGGCGGAGGTCGCGGGTTCGAATC
CCGCCGGCGGCTtac
Downstream region at tRNA end position 
ctagctttta
Secondary structure (Cloverleaf model)
>At2143	Thr	GGT
                   c      Ttac ctagctttta
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     G
      C     C T C G       G C G G G     C
      G     | | | |                 T T
      G     G A G C
        A A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCGGAAGAGCGCCGCCCTGGTAAGGCGGAGGTCGCGGGTTCGAATC
CCGCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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