The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2144
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 407651
End posion on genome 407577
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tgcaaactct
tRNA gene sequence 
GGGCCCGTAGTCTAGCCTGGCTAGGACGCCGGGTTTGGGTCCCGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCAtta
Downstream region at tRNA end position 
ttctttttct
Secondary structure (Cloverleaf model)
>At2144	Pro	TGG
                   t      Atta ttctttttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    C T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCCTGGCTAGGACGCCGGGTTTGGGTCCCGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK