The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2145
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 417098
End posion on genome 417025
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
attactctct
tRNA gene sequence 
GCCCGGGTAGCTCAGCCCGGTAGAGCGGCCGGCTGTTAACCGGCAGGTCCCCGGTTCGAA
TCCGGGCCCGGGCGcta
Downstream region at tRNA end position 
tatatttaaa
Secondary structure (Cloverleaf model)
>At2145	Asn	GTT
                   t      Gcta tatatttaaa
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G G C C     A
      C G A        A      | | | | |     G
    C       C T C G       C C C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G - C
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTAGCTCAGCCCGGTAGAGCGGCCGGCTGTTAACCGGCAGGTCCCCGGTTCGAA
TCCGGGCCCGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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