The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2146
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 444819
End posion on genome 444748
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
cctatttact
tRNA gene sequence 
GGGCCCGTAGTCTAGGGGTATGACGCCGCCCTCACGAGGCGGAGGTCCGGGGTTCGAATC
CCCGCGGGCCCAtta
Downstream region at tRNA end position 
tggatggaac
Secondary structure (Cloverleaf model)
>At2146	Val	CAC
                   t      Atta tggatggaac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      G     T C T G       C G G G G     C
      G       | | |                 T T
      G     T G A C
        T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGGGGTATGACGCCGCCCTCACGAGGCGGAGGTCCGGGGTTCGAATC
CCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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