The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2199
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 56438
End posion on genome 56542
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position
gactgatgga
tRNA gene sequence
GCCGGGGTGCCCGAGCGGCCTAAGGGGTCGGGCTGCAGACCCGATCTCTCCCGGGTTCGA
ATCCCGGCCCCGGCTCCA
Downstream region at tRNA end position
cctaccatca
Secondary structure (Cloverleaf model)
>At2199	Cys	GCA
                   a      TCCA cctaccatca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       C C G G G     C
    G         | | |                 T T
    C       A G G G
      C T A        G     TCTCTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGCCTAAGGGGTCGGGCTGCAGtggagcgttggccaccgcccgt
tggatACCCGATCTCTCCCGGGTTCGAATCCCGGCCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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