The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2200
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 87386
End posion on genome 87462
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
ccagcgcccg
tRNA gene sequence 
GCCCCCGTAGCTCAGCCAGGAAGAGCGCGGGCCTTCGGAGCCCGTGGTCGCGGGTTCAAA
TCCCGCCGGGGGCGCCA
Downstream region at tRNA end position 
ctcgaaagct
Secondary structure (Cloverleaf model)
>At2200	Arg	TCG
                   g      GCCA ctcgaaagct
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    A       | | | |                 T T
    G       G A G C
      G A A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCCGTAGCTCAGCCAGGAAGAGCGCGGGCCTTCGGAGCCCGTGGTCGCGGGTTCAAA
TCCCGCCGGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK