The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2201
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 152550
End posion on genome 152637
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
atgccccgga
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGCCAGGGCGCCGGCCTGCTAAGCCGGTGGGGGAAACCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
tccttcccgc
Secondary structure (Cloverleaf model)
>At2201	Ser	GCT
                   a      GCCA tccttcccgc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        C      | | | | |     A
  T         T C C G       G C G G G     C
  G         + | | |                 T T
  G         G G G C
    C C A          G     TGGGGGAAACCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTCGCCTAGCCTGGCCAGGGCGCCGGCCTGCTAAGCCGGTGGGGGAAACCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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