The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2203
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 314236
End posion on genome 314337
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gcccgggtcc
tRNA gene sequence 
GGGGCCGTCGTCTAGCTTGGTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
cccctcaaac
Secondary structure (Cloverleaf model)
>At2203	Pro	GGG
                   c      ACCA cccctcaaac
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     A
    T       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCTTGGTAGGATGCCAGCCTGGGGagggaaatccccgcgtcccccg
gatCGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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