The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2204
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 498947
End posion on genome 499024
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
ggacccggag
tRNA gene sequence 
GGCCCCGTCGCCTAGCCAGGATAGGGCGCCGGCCTTCTAAGCCGGTAGTCCCGGGTTCAA
ATCCCGGCGGGGCCACCA
Downstream region at tRNA end position 
cccccgtcgc
Secondary structure (Cloverleaf model)
>At2204	Arg	TCT
                   g      ACCA cccccgtcgc
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  A         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     TAGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCCCCGTCGCCTAGCCAGGATAGGGCGCCGGCCTTCTAAGCCGGTAGTCCCGGGTTCAA
ATCCCGGCGGGGCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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