The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2205
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 539363
End posion on genome 539477
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gacggcgaga
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGACTAGGATGCGGGGTTCGGGTCCCCGTGGCCCCGGGTTCA
AATCCCGGCGGGCCCACCA
Downstream region at tRNA end position 
ctcaaaactc
Secondary structure (Cloverleaf model)
>At2205	Pro	CGG
                   a      ACCA ctcaaaactc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGCC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  T*      T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGACTAGGATGCGGGGTacgccggcgagccccgcgacgggtc
cggcgcccgacTCGGGTCCCCGTGGCCCCGGGTTCAAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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