The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2207
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 702165
End posion on genome 702242
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tggccggagg
tRNA gene sequence 
GCCGCCGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCGGCACCA
Downstream region at tRNA end position 
aaacctcaaa
Secondary structure (Cloverleaf model)
>At2207	Glu	TTC
                   g      ACCA aaacctcaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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