The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2210
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 949437
End posion on genome 949512
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
cccggaaggg
tRNA gene sequence 
GCCGCCGTAGCTCAGCCGGCAGAGCGCCGCCCTGGTAAGGCGGAGGTCCCGGGTTCAAGT
CCCGGCGGCGGCTCCA
Downstream region at tRNA end position 
cgctctaccc
Secondary structure (Cloverleaf model)
>At2210	Thr	GGT
                   g      TCCA cgctctaccc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCGGCAGAGCGCCGCCCTGGTAAGGCGGAGGTCCCGGGTTCAAGT
CCCGGCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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