The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2211
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1000816
End posion on genome 1000903
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position
ccggagcctc
tRNA gene sequence
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGTCGGGCTCAGGACCCGATGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position
accctctcgc
Secondary structure (Cloverleaf model)
>At2211	Leu	CAG
                   c      ACCA accctctcgc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGGCGTAGGCCTGC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGTCGGGCTCAGGACCCGATGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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