The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2212
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1069318
End posion on genome 1069404
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tggggtcgga
tRNA gene sequence 
GCCGGGGTGCCCGAGCCCGGAAAAGGGGGCGGGCTTAAGACCCGCTGGCGTAGGCCTGCG
TGGGTTCAAATCCCACCCCCGGCACCA
Downstream region at tRNA end position 
cctaaaggcc
Secondary structure (Cloverleaf model)
>At2212	Leu	TAA
                   a      ACCA cctaaaggcc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  C         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    A A A          G     TGGCGTAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCCCGGAAAAGGGGGCGGGCTTAAGACCCGCTGGCGTAGGCCTGCG
TGGGTTCAAATCCCACCCCCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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