The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2213
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1134528
End posion on genome 1134624
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
aacgggggtt
tRNA gene sequence 
GGCCCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTCCTAAGCCGGTGGTCCGGGGTTCAA
ATCCCCGCGGGGCCGCCA
Downstream region at tRNA end position 
cggcctcgcc
Secondary structure (Cloverleaf model)
>At2213	Arg	CCT
                   t      GCCA cggcctcgcc
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCCCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTCCTAtcccgtgcggggttgggaaAG
CCGGTGGTCCGGGGTTCAAATCCCCGCGGGGCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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