The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2214
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1146618
End posion on genome 1146694
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
agttgcccgg
tRNA gene sequence 
GGCCCCGTAGCTCAGCCAGGAAGAGCGCGGGCCTCCGGAGCCCGTGGTCCCGGGTTCAAG
TCCCGGCGGGGCCGCCA
Downstream region at tRNA end position 
ccccgcgtat
Secondary structure (Cloverleaf model)
>At2214	Arg	CCG
                   g      GCCA ccccgcgtat
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G A A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCCCCGTAGCTCAGCCAGGAAGAGCGCGGGCCTCCGGAGCCCGTGGTCCCGGGTTCAAG
TCCCGGCGGGGCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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