The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2215
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1245035
End posion on genome 1245121
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ctcctctacc
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGCCCAAGGGGCCGGCCTTGAGAGCCGGTGGGGGAAACCCCGCG
CGGGTTCGAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
gagtcgcacg
Secondary structure (Cloverleaf model)
>At2215	Ser	TGA
                   c      GCCA gagtcgcacg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    C       A G G G
      C C A        G     TGGGGGAAACCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGCCCAAGGGGCCGGCCTTGAGAGCCGGTGGGGGAAACCCCGCG
CGGGTTCGAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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