The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2216
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1250644
End posion on genome 1250717
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
caccttcggc
tRNA gene sequence 
GGGCCCGTAGCTTAGCCCGGCAGAGCGCCCGGCTGATAACCGGGAGGCCGGGGGTTCAAA
TCCCCCCGGGCCCActa
Downstream region at tRNA end position 
aacctcccgc
Secondary structure (Cloverleaf model)
>At2216	Ile	GAT
                   c      Acta aacctcccgc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       T T C G       G G G G G     C
    C       + | | |                 T T
    G       G A G C
      G C A        G     AGGCC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCCCGGCAGAGCGCCCGGCTGATAACCGGGAGGCCGGGGGTTCAAA
TCCCCCCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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