The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2218
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1289353
End posion on genome 1289431
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gctcaccgag
tRNA gene sequence 
GGCCCCGTGGCCTAGCCTGGACTAGGGCGCCGGCCTGCGGAGCCGGAGGTCCCGGGTTCA
AATCCCGGCGGGGCCGCCA
Downstream region at tRNA end position 
cgaccagaca
Secondary structure (Cloverleaf model)
>At2218	Arg	GCG
                   g      GCCA cgaccagaca
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  T         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A C T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCCCCGTGGCCTAGCCTGGACTAGGGCGCCGGCCTGCGGAGCCGGAGGTCCCGGGTTCA
AATCCCGGCGGGGCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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