The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2220
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1276107
End posion on genome 1276031
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
accggggttc
tRNA gene sequence 
GGGGCCGTCGTCTAGCCCGGAAGGACGCCGCCCTCACACGGCGGTAGTCCGGGGTTCAAA
TCCCCGCGGCCCCACCA
Downstream region at tRNA end position 
cgcgttcctc
Secondary structure (Cloverleaf model)
>At2220	Val	CAC
                   c      ACCA cgcgttcctc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     A
    C       T C T G       C G G G G     C
    C       + | | |                 T T
    G       G G A C
      G A A        G     TAGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCCCGGAAGGACGCCGCCCTCACACGGCGGTAGTCCGGGGTTCAAA
TCCCCGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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