The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2221
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1266904
End posion on genome 1266817
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
gcactgtgga
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTCGAAGGGGGCGGGCTCAAGACCCGCTGGCGTAGGCCGGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
cgcccccgtt
Secondary structure (Cloverleaf model)
>At2221	Leu	CAA
                   a      ACCA cgcccccgtt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C G A        G     TGGCGTAGGCCGGC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCGAAGGGGGCGGGCTCAAGACCCGCTGGCGTAGGCCGGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK