The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2222
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1252098
End posion on genome 1251982
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
agctcacaac
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGCCCAAGGGGGTGGGCTCGAGACCCACTGCCCCAATCAGGGGC
GCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
cgagttgacc
Secondary structure (Cloverleaf model)
>At2222	Ser	CGA
                   c      GCCA cgagttgacc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    C       A G G G
      C C A        G     TGCCCCAATCAGGGGCGC
                    G - C
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGCCCAAGGGGGTGGGCTCGAGacctccagcgcccgaagcgacc
gagagACCCACTGCCCCAATCAGGGGCGCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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