The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2225
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1207633
End posion on genome 1207560
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ggtgccggaa
tRNA gene sequence 
GGGGCCGTCGTCTAGCTTGGTAGGATGCGGGGCTTGGGCCCCCGTGGTCCGGGGTTCAAA
TCCCCGCGGCCCCAcct
Downstream region at tRNA end position 
aaagccccag
Secondary structure (Cloverleaf model)
>At2225	Pro	TGG
                   a      Acct aaagccccag
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     A
    T       T C T G       C G G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCTTGGTAGGATGCGGGGCTTGGGCCCCCGTGGTCCGGGGTTCAAA
TCCCCGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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