The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2227
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1180979
End posion on genome 1180908
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ccacggagga
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGTCGTCCGGGGTTCGAATC
CCCGCGGCGGCAcat
Downstream region at tRNA end position 
cgacccggtc
Secondary structure (Cloverleaf model)
>At2227	Phe	GAA
                   a      Acat cgacccggtc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      C     C T C G       C G G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     TCGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGTCGTCCGGGGTTCGAATC
CCCGCGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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