The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2228
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1180891
End posion on genome 1180815
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
cccggtcttc
tRNA gene sequence 
GGGGCCGTCGTCTAGCCCGGAAGGACGCCGCCCTGACACGGCGGTAGTCCGGGGTTCAAA
TCCCCGCGGCCCCACCA
Downstream region at tRNA end position 
cccccctaaa
Secondary structure (Cloverleaf model)
>At2228	Val	GAC
                   c      ACCA cccccctaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     A
    C       T C T G       C G G G G     C
    C       + | | |                 T T
    G       G G A C
      G A A        G     TAGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGCCCGGAAGGACGCCGCCCTGACACGGCGGTAGTCCGGGGTTCAAA
TCCCCGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK