The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2229
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1168347
End posion on genome 1168271
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position
cccagccgac
tRNA gene sequence
GGGCCGGTAGCTCAGCCTGGAAGAGCGCTCGGCTTGCACCCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Downstream region at tRNA end position
gcctctccca
Secondary structure (Cloverleaf model)
>At2229	Ala	TGC
                   c      ACCA gcctctccca
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       C
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGCGCTCGGCTTGCACCCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK