The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2233
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 882007
End posion on genome 881932
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
ctcccccgga
tRNA gene sequence 
GCCGGGGTAGCTCAGCTGGTAGAGCGCCGGGCTGTTAACCCGGTGGCCGGAGGTTCGAGT
CCTCCCCCCGGCGCCA
Downstream region at tRNA end position 
caacaatttt
Secondary structure (Cloverleaf model)
>At2233	Asn	GTT
                   a      GCCA caacaatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C C T C C     A
      C G A        A      | | | | |     G
    T       C T C G       G G A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCTCAGCTGGTAGAGCGCCGGGCTGTTAACCCGGTGGCCGGAGGTTCGAGT
CCTCCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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