The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2236
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 500985
End posion on genome 500910
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
agggtcccgg
tRNA gene sequence 
AGCCGGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAAT
CCCCGCCCGGCTACCA
Downstream region at tRNA end position 
caagctccca
Secondary structure (Cloverleaf model)
>At2236	Gln	CTG
                   g      ACCA caagctccca
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C G G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAAT
CCCCGCCCGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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