The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2238
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 389420
End posion on genome 389316
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position
gcctctcagg
tRNA gene sequence
GCCGCCGTAGCTCAGCTGGCAGAGCGCCGGCCTTGTAAGCCGGTGGTCGCGGGTTCAAAT
CCCGCCGGCGGCTCCA
Downstream region at tRNA end position
cccctcgtcg
Secondary structure (Cloverleaf model)
>At2238	Thr	TGT
                   g      TCCA cccctcgtcg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCTGGCAGAGCGCCGGCCTTGTAtccggtacctctgggagtaccgg
ccggagAGCCGGTGGTCGCGGGTTCAAATCCCGCCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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